The Ark Fleet has been destroyed, and a significant number of the enemy's troops have been wiped out due to its crash landing. As the remaining forces of the Holy Order of Michael regroup in order to launch a final assault on Weiswolf Castle, the wZERO unit, along with their new ally Ashley Ashra, stand ready to intercept them. Meanwhile, with his Geass out of control, Shin moves to erase his younger brother's existence once and for all. But Akito, having promised Leila that he will come back alive, refuses to accept such a fate, and the two clash in their final battle.
While W-0 is away, Leila and the remaining crew at base find themselves surrounded by Britannian Knightmares. Piloting the Vercingetorix, Shin Hyuuga leads the enemy charge, having usurped the position of Grand Master in the Knights of St. Michael. With her core members unavailable, it's up to Leila to protect her comrades, but this may be much tougher than she realizes: a spy lurking among them is finally ready to reveal himself. Left with no choice but to surrender, Leila arranges a meeting with Shin in order to ensure the safety of her squad. But as negotiations begin to fall apart, Akito and an unexpected ally return in the nick of time to turn things around.
The war between Euro Britannia and the European Union continues. New orders are given to the W-0 Unit. To land in the middle of the enemy territory as a diversion. The pilots of the W-0 Unit consist only of the commanding officer, Leila, the only surviving Japanese from their last battle, Akito, and the three that escaped from the Eleven ghettos and lived in the underworld, Ryou, Yukiya, and Ayano. With everyone holding their respective expectations, the operation moves forward. On the other side in Euro Britannia, Shin, who made his benefactor commit suicide with the mysterious power of “Geass”, is appointed the leader of the Knights of St. Michael. As Shin steadily advances for the sake of his own ambition, he and his subordinates in the Ashura squad are given orders to deploy. The one that lives in order to fight, and the one that fights in order to live.
The film revolves around a mysterious girl named Éclair who appears before Fairy Tail, the world's most notorious wizard's guild. She lost all of her memories, except for the imperative that she must deliver two Phoenix Stones somewhere. The stones may spell the collapse of the magical world, and Natsu, Lucy, and the rest of the Fairy Tail guild are caught up in the intrigue.